how to create interacting Hi-C peaks

Question

[rheab1230]

Hello everyone, I want to ask how to create a similar image from a paper. I am using 3D-genome online tool using their capture Hi-C method. But I am not able to create this kind of results. My result is coming like this: Does anyone know how to do this? Thank you.

[ATpoint]

It's called Sashimi plot. You probably find it instructions in the docs of IGV.

[rheab1230]

thank you. i will go through it

Answer 1

[Buffo]

Years ago, I used Sushi (page 13), it was a very useful package for visualizing "interaction arcs". I think IGV is not an option when the arcs are many kb long or when you want to visualize interactions in long regions.

[rheab1230]

Thank you. I will use this package since I am more familiar with R