Samtools: remove unmapped reads as well as reads that are mapped incorrectly
0
0
Entering edit mode
20 months ago

Hello, I have to remove unmapped reads and mapped incorrectly reads by using samtools view. I have found in the internet and in samtools view manual, to do that I have to use options -F and -q. But I don't understand how people decide to use, for example, -F 4 -q 10 or -F 8 and so on. On what I have to base on, then I want to chose "power" of options?

samtools • 357 views
ADD COMMENT

Login before adding your answer.

Traffic: 2729 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6