how to get genomic range for hi-c datasets in hdf5 file

Question

[rheab1230]

Hello everyone,

I have hi-c contact map in hdf5 file. I stored the data for chr9 in a variable. But it doesn't have genomic range. Does anyone know how to add colnames and rownames with respect to genomic range for the matrix.

BiocManager::install("rhd5f")
library(rhd5f)
h5f = H5Fopen("GSE77565_FBD_IC-heatmap-chr-40k.hdf5")
h5f
HDF5 FILE 
        name /
    filename 

        name       otype dclass         dim
0  (0, 0)    H5I_DATASET FLOAT  6232 x 6232
1  (1, 1)    H5I_DATASET FLOAT  6080 x 6080
2  (10, 10)  H5I_DATASET FLOAT  3376 x 3376
3  (9, 9)  H5I_DATASET FLOAT  3347 x 3347
4 _self_key H5I_DATASET STRING ( 0 )      

chr9 <- as.data.frame(h5read("GSE77565_FBD_IC-heatmap-chr-40k.hdf5", "(9, 9)"))

My data look like this:

In this case chr9 has interacting frequency but there is no rownames or colnames mentioning the genomic range which is interacting. Does anyone know how to incorporate that information

Thank you