The Biostar Herald publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit links here.
This edition of the Herald was brought to you by contribution from Istvan Albert, and was edited by Istvan Albert,
https://academic.oup.com/gigascience/article/10/2/giab008/6137722
SAMtools and BCFtools are widely used programs for processing and analysing high-throughput sequencing data. They include tools for file format conversion and manipulation, sorting, querying, statistics, variant calling, and effect analysis amongst other methods.
Perhaps the most consequential tools of bioinformatics.
submitted by: Istvan Albert
GitHub - imgag/ngs-bits: Short-read sequencing tools (github.com)
ngs-bits - Short-read sequencing tools
submitted by: Istvan Albert
GitHub - RealTimeGenomics/rtg-tools: RTG Tools: Utilities for accurate VCF comparison and manipulation (github.com)
RTG Tools is a subset of RTG Core that includes several useful utilities for dealing with VCF files and sequence data. Probably the most interesting is the vcfeval command which performs sophisticated comparison of VCF files.
submitted by: Istvan Albert
Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day next Friday (4/7). All talks will be live-streamed (no registration required) at https://t.co/mkkGb2p91d pic.twitter.com/KFCJ50lQIz
— Rahul Satija (@satijalab) March 27, 2023
Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day next Friday (4/7). All talks will be live-streamed (no registration required) at https://t.co/mkkGb2p91d pic.twitter.com/KFCJ50lQIz
— Rahul Satija (@satijalab) March 27, 2023submitted by: Istvan Albert
With this feature, that the @MaayanLab just added to #Enrichr https://t.co/6hB2xJcimf, you can now search for any term, and then download selected gene sets that contain to the search term in their annotation string. #Bioinformatics #Omics #DataMining #BiomedicalResearch #BigData pic.twitter.com/mHdDMb1mfp
— AviMaayan (@AviMaayan) March 27, 2023
With this feature, that the @MaayanLab just added to #Enrichr https://t.co/6hB2xJcimf, you can now search for any term, and then download selected gene sets that contain to the search term in their annotation string. #Bioinformatics #Omics #DataMining #BiomedicalResearch #BigData pic.twitter.com/mHdDMb1mfp
— AviMaayan (@AviMaayan) March 27, 2023submitted by: Istvan Albert
GitHub - moshi4/pyGenomeViz: A genome visualization python package for comparative genomics (github.com)
pyGenomeViz is a genome visualization python package for comparative genomics implemented based on matplotlib. This package is developed for the purpose of easily and beautifully plotting genomic features and sequence similarity comparison links between multiple genomes.
submitted by: Istvan Albert
Want to get the Biostar Herald in your email? Who wouldn't? Sign up righ'ere: toggle subscription
