Hi
I have an urgent question about running rMATs, I usually running rMATs after running STAR alignment with original fastq files.
However, I'm unable to find the original fastq files recently, and I need to use the bioinformatic tools to detect novel and annotated events, I'm wondering if I can use the pseudoalignments bam file from Kallisto to run rMATs? or if there are any suggestions?
Thank you!!