ROSE superenhancer labels

Question

[os306]

Hello, I am using ROSE to analyze superenhancers in my ChIP-Seq data. I was wondering if someone who is experienced in using ROSE could help me with a seemingly simply query please.

One of the outputs from ROSE is a "hockey stick plot" which plots all enhancers on a scatterplot, with superenhancers classified as those above the inflexion point (see attached image).

My question is: if I wanted to label superenhancers on this plot (e.g. the highest ranked superenhancer) how would I do this? What I want to do is similar to the attached image.

Thank you!

[Tao]

Hi, Can you tell me how this graph was generated?

I encountered this problem when running ROSE, Does you know how to solve it? Thanks very much for your help.

Traceback (most recent call last):
File "ROSE_main.py", line 484, in
main()
File "ROSE_main.py", line 336, in main
startDict = ROSE_utils.makeStartDict(annotFile)
File "/Users/liurui/ROSE/ROSE_utils.py", line 168, in makeStartDict
refseqTable,refseqDict = importRefseq(annotFile)
File "/Users/liurui/ROSE/ROSE_utils.py", line 230, in importRefseq
if refseqDict.has_key(line[1]):
IndexError: list index out of range

[Ram]

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