Annovar file

Question

[Nanditha]

Hello

My avinput.exonic variant function file and avinput.hg38_cytoband files in annovar is 0 bytes

What is the reason for this.

Please help what should i do

Im learning to use annovar tool

[Nanditha]

i have these coomands.

1. perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar refGene humandb/
2. perl annotate_variation.pl -buildver hg38 -downdb genomicSuperDups humandb/
3. perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar dbnsfp42a humandb/
4. perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar esp6500siv2_all humandb/
5. perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar avsnp150 humandb/
6. perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar intervar_20180118 humandb/
7. perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar revel humandb/ 8.perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar cosmic70 humandb/

1. perl table_annovar.pl new.avinput humandb/ -buildver hg38 -out myanno -remove -protocol refGene,cytoBand,dbnsfp30a,genomicSuperDups,esp6500siv2_all,1000g2015aug_all,intervar_20180118,revel,cosmic70 -operation g,r,f,r,f,f,f,f,f -nastring . -csvout

[Viktor Messi]

Can you shows your first 10 lines of your new.avinput file?