Customizable pvalue scales in clusterprofiler

Question

[Omics data mining]

Hello

I used clusterprofiler for GO enrichment analysis. For each ontology, it gives plots with "different" p.adj scaling value. For BP ontology dot plot, padj value ranges from 0.001 to 0.01 . While for CC ontology, dotplot gives p.adj scale value from 0.01 to 0.03. Is it possible to draw multiple dotplot with same p.adj scale from clusterprofiler object. I tried xlim but it remove many rows containing geom_point.

g <- dotplot(k1_all , font.size = 7,  showCategory=sel[1:20])  +

+ facet_grid(rows = ONTOLOGY~.)  +  xlim(c(0.0001, 0.0491791))

Warning message: Removed 5 rows containing missing values (geom_point()).

Also tried to adjust p.adj values with scale_x_continuous. But no change in the output.

dotplot(k1_all , font.size = 7,  showCategory=sel[1:20])  + facet_grid(rows = ONTOLOGY~.)  +
  scale_x_continuous(breaks = seq(c(0.0001, 0.0491791)))

I would appreciate all the suggestions.

Thanks in advance

[rpolicastro]

You probably want scale_color_continuous(limits=c(1e-04, 0.05))