Entering edit mode
18 months ago
kxk302
▴
20
Hello,
We would like to know about the tools used in detecting valleys in Chip-seq like data. Can the tools that detect peaks also detect valleys? Or, are there specific tools for valley detection?
Best,
-Kaivan
How do you distinguish valleys from lack of signal/sequencing depth?
Also: regions which can not be mapped using reads of length X.
I know of https://academic.oup.com/nar/article/44/9/4037/2462443 but never used it. Don't ask me whether reliable or not. For which analysis do you need that?
Thank you all. I'll check the scipy tool and the paper.