Entering edit mode
19 months ago
ali.kian.saei
▴
10
annotLookup <- select(hugene20sttranscriptcluster.db, keys = "TC1000011370.hg.1" , keytype = "ENTREZID",
columns = c( "ENSEMBL", "SYMBOL", "ENTREZID"))
Error in .testForValidKeys(x, keys, keytype, fks) :
None of the keys entered are valid keys for 'ENTREZID'. Please use the keys method to see a listing of valid arguments
what can i do for change Affymetrix transcript cluster id to Gene Symbol? Affymetrix transcript cluster id like "TC1000011370.hg.1"
Looks like these ID's are from Clariom arrays, which are now part of Thermo Fisher.
GEO platform annotation may have the info you are looking for: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL23126
This file from Broad institute seems to have the annotations.