How to set the 'PASS' value in the filter column of a VCF file with '.' only?
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19 months ago
Chris ▴ 340

Hi all, I created a vcf file but the filter column only has dot (.). So how can I get a pass value for this column? I looked at other vcf file with QUAL values below 20 and still get a PASS. Thank you so much!

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