Can I perform ANOVA test on rlog data of RNA sequencing counts?

Question

[Amr]

Can I perform ANOVA test on rlog data of RNA sequencing counts? in order to see if the samples are different for example the cancer replicates from normal replicates? I did DESeq2, PCA, Heatmaps (Sample-distant matrix), Z-scores, Heatmaps for Z-score, is there something else suggested I can do?

[andres.firrincieli]

ANOVA or T-test? See the answers to your previous post.