single cell RNA analysis in python
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18 months ago
sooni ▴ 20

Hello.

I am practicing single cell sequence analysis using Python.

After loading the h5 file using the 'sc.read_10x_h5' function, I ran the code using the 'sc.pp.filter_cells' and 'sc.pp.filter_genes' functions, and no error occurred. By the way, there is no var content of data. There are only column names such as gene_ids and feature_type, and there is no content in each column. It is like the picture below.

enter image description here

When analyzed in R with the same data, gene_ids were displayed as 'chr1: 44959708-45072070'. Is the reason why gene_ids don't appear in python related to this?

How can I solve it? Please help me.

cell single python • 463 views
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