Cibersort phenotpe file to create signature matrix

Question

[ce810b57]

Hi, I am trying to create a phenotype class file in cibersort. I want to know how to assign 1, 2 or 0 to cell types. I have different cells compared to the LM22 matrix. Any advice on how to build your own phenotype class file?

[FrankStarling]

I am looking for advice on the same question. Please let me know if you have understood how to proceed and created a custom signature matrix file.

[jv]

the CIBERSORTx website has all the information needed for formatting and using custom data sets. However, you first need to register to access the tutorials

Answer 1

[Gama313]

If you follow this link, there is information regarding files formatting. (https://cibersortx.stanford.edu/upload.php). Let me know if everything went fine.