INSTALLING DEseq2 via conda

Question

[Fizzah]

Hello,

I am installing Dseq2 software for RNA seq analysis via conda but it says

UnsatisfiableError: The following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.35=0
  - bioconductor-deseq2 -> libgcc-ng[version='>=10.3.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.35

I have created a new environment and try to install but still it gives same error

Please help

Answer 1

[rpolicastro]

You should include the command you're running otherwise we can't really provide any specific advice.

For some generic advice, I would try creating a new environment with DESeq2 and the other libraries you need.

# Update conda.
conda update -n base -c defaults conda

# Create the new environment.
conda create -n deseq2 -c conda-forge -c bioconda bioconductor-deseq2

# Activate the environment.
conda activate deseq2

[Fizzah]

thank you issue solved

[Fizzah]

this is the command i run

1. create new environment conda create -n diff_gene

2. installation conda install -c bioconda bioconductor-deseq2