highlight regions in a dot-plot?
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18 months ago
Buffo ★ 2.4k

Do you know any tool to add annotations or highlight regions in a dot-plot? like the figure below using Pafr. Pafr is great but has a bug when comparing genomes with different sizes.

figure

figure dotplot alignment synteny • 724 views
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if your plot is a ggplot object you can use annotate to add a colored block to your plots. https://ggplot2.tidyverse.org/reference/annotate.html

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Yes, it is. I need to highlight multiple regions using a dataframe as input though. I'll take a look, it seems possible using annotate, thanks!

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