highlight regions in a dot-plot?
0
0
Entering edit mode
18 months ago
Buffo ★ 2.4k

Do you know any tool to add annotations or highlight regions in a dot-plot? like the figure below using Pafr. Pafr is great but has a bug when comparing genomes with different sizes.

figure

figure dotplot alignment synteny • 718 views
ADD COMMENT
1
Entering edit mode

if your plot is a ggplot object you can use annotate to add a colored block to your plots. https://ggplot2.tidyverse.org/reference/annotate.html

ADD REPLY
0
Entering edit mode

Yes, it is. I need to highlight multiple regions using a dataframe as input though. I'll take a look, it seems possible using annotate, thanks!

ADD REPLY

Login before adding your answer.

Traffic: 1903 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6