Entering edit mode
17 months ago
Sapphire
▴
10
Hi, i am trying to run Protparam and it gives the following error. Please let me know, how to use it on multiple files if anyone has used it before.
./protParamWrap -s example/sequence.fasta
|Seperating .fasta file into single files... |
|... |
|Creating protParam files... |
|... |
|Calculating protein parameter based on sequence... |
| Processing file 1 of 26 |
ERROR: LoadError: UndefVarError: `composition` not defined
Stacktrace:
[1] protparam(protein::LongAA)
@ ProtParam ~/miniconda3/envs/julia/share/julia/packages/ProtParam/Cq85q/src/ProtParam.jl:98
[2] top-level scope
@ ~/neelam/protParamWrap/34wt24-protParam.jl:7
in expression starting at /home/bvsbic/neelam/protParamWrap/34wt24-protParam.jl:7
| Processing file 2 of 26 |
ERROR: LoadError: UndefVarError: `composition` not defined
Stacktrace:
[1] protparam(protein::LongAA)
@ ProtParam ~/miniconda3/envs/julia/share/julia/packages/ProtParam/Cq85q/src/ProtParam.jl:98
[2] top-level scope
@ ~/neelam/protParamWrap/ACO25189-protParam.jl:7
in expression starting at /home/bvsbic/neelam/protParamWrap/ACO25189-protParam.jl:7
| Processing file 3 of 26 |
Thank you