Plotting GO enrichment DATA

Question

[hellokwmin]

Hello,

I am trying to visualize the result of GO enrichment analysis. My dataframe looks like:

And I used this R code to visualize:

ggplot(ego, showCategory = 20, aes(Count, Description, fill = ONTOLOGY)) + geom_bar(stat = "identity") +
  facet_wrap(~ ONTOLOGY, nrow = 5, , scales = "free", drop = FALSE) +
  theme(legend.position = "bottom",
        axis.title.y = element_blank()) +
  geom_text(
    aes(label = paste(Count)),
    color = "black",
    size = 4,
    hjust = 0.1,
    position = position_dodge(0.9)
  )

But, with this code, only BP part is shown.

How could I present all GO such as BP, MF, and CC ? in dataframe, there are MF and CC also within ONTOLOGY section..

[Pierre Lindenbaum]

how about your previous questions ? comment/validate them please. Modify fasta file header python script revision for sequencing depth