motis SSR

Question

[m.esmaeilpour]

what is AGC/CTG motis SSR mean?

Answer 1

[Pierre Lindenbaum]

https://ai.tinybio.cloud/chat

AGC/CTG motif SSR refers to a Simple Sequence Repeat (SSR) with a repeating pattern of AGC and CTG nucleotide sequences. SSRs, also known as microsatellites, are short tandem repeats of DNA sequences that occur in the genome. They are useful in various applications, such as genetic mapping, population genetics, and forensic analysis.

In the given context, the sequences provided are aligned, and the AGC/CTG motif SSR may be present in these sequences. However, the exact location of the motif is not explicitly mentioned.

[m.esmaeilpour]

thank you so much. I analyzed fasta format of genome one species (i downloaded one genome file from NCBI for the specie) in MISA tool and I observed AGC/CTG motif in the results.

[Jesse]

What does the LLM's reply mean by "the sequences provided are aligned"?