I have synteny result file in ".collinearity" format. I want map synteny for only my gene of interest. Please suggest me any software which can map synteny for selected gene.
I compile a large list of visualization tools, here are all tools I have tagged "comparative" which can include synteny viewers https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&tag=Comparative
I am also a developer of JBrowse 2, it does not parse collinearity files natively, but if you can convert them into a format we do support, then it might work well since JBrowse 2 allows you to interactively zoom in on a region of interest, etc.
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