nf-core/rnaseq pipeline

Question

[وفاء]

Hi all,

I use the nf-core/rnaseq pipeline in the cluster, which results in the following error:

Error: r2-scr unexpectedly ended before r1-src 
caused by:
unexpected end of file.

[Pierre Lindenbaum]

check your input fastqs : Convert Bam to Fastq

[وفاء]

Thank you Pierre, I checked my input fastq I think I have done the conversion correct

[Asaf]

Can you check that R1 and R2 have the same number of sequences?