Entering edit mode
17 months ago
kat.bi
•
0
I have multiple .vcf files for different samples/ IDs. I need the unique set of variants or entries for a particular sample alone excluding the variants existing in all other samples. So could bcftools/ any other tools help with that? Which are the fields in VCF that I would need to consider to achieve this?
you want
bcftool isec
I used that, but only giving few fields in output. How to get all fields as in the original .vcf?
Can you help more elaborately on further commands to filter/query using isec based on allele uniquenes as I'm getting large no. of samples after isec --complement? @Pierre Lindenbaum