are there specific tools to look for multiplies copies of GOI in bacteria genome?
0
0
Entering edit mode
17 months ago
hwen7 ▴ 10

I realize one could probably do this by blasting the GOI against the bacteria genome and look for homologs, but I'm wondering if there is a tool that can do that at scale. I have the fasta sequences of genes I am interested in and can find a way to obtain the genomes too. I just need to be able to go through hundreds of genes and see if there are duplications / homologs around.

I feel like I've seen something like this done in the workflow of roary / prokka (either one of them).

I am familiar-ish with command line.

duplication homologs • 385 views
ADD COMMENT

Login before adding your answer.

Traffic: 1563 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6