Batch correction score and bio conservation score how to get those?

Question

[Andy]

Hello everyone,

I read an article today. The link to the article is: https://www.nature.com/articles/s41591-023-02327-2#Fig7.

I have also conducted several batch correction analyses, and I would like to calculate the batch correction score and biological conservation score for my integration analysis results. However, I am unsure about the process and the author did not provide clear instructions. Therefore, I would greatly appreciate any suggestions or guidance you can provide. Thank you very much.

Andy

Answer 1

[Mensur Dlakic]

Not sure than anyone can answer that question better than the authors themselves. They have a detailed code section at the end. Specifically, they have a repository dedicated to reproducibility of figures, which is as good as one can expect:

https://github.com/LungCellAtlas/HLCA_reproducibility

[Andy]

I totally agree. I will take a look and may ask the authors directly. Thanks