How to remove batch effect from TCGA RNA-seq data?

Question

[Khas-erdene]

Hello,

I have input of 23000 genes of data table and run blockwise module. It shows that one module has 17000 of genes clustered. I don't know how to remove batch effect which I read from other researchers's paper.

Answer 1

[Ming Tommy Tang]

there is a recent paper on this https://www.nature.com/articles/s41587-022-01440-w