Is there any way to access gnomAD data from R?

Question

[sooni]

Hi. I have a question.

Is there any way to access 'gnomAD' data in R? I want to get the allele frequency of gnomAD data.

Is it possible? If there is a way, please let me know.

[zx8754]

Related post:

• Extract allele count from gnomAD using R

[Ming Tommy Tang]

this? https://bioconductor.org/packages/release/data/annotation/html/MafDb.gnomAD.r2.1.GRCh38.html or https://github.com/daynefiler/gnomadR

Answer 1

[Pierre Lindenbaum]

download gnomad VCFs and use a vcf library to access allele data for the variant