Mapping PWM of transcription factor motifs to the human genome

Question

[John]

Is there a detailed explanation/guide out there on how I would approach mapping position weight matrix (PWM) of transcription factor motifs to the human genome, utilizing PANDA and R? I already have the motif data downloaded.

[Nitin Narwade]

Did you try googling this issue?

Because I tried and there plenty of options, one of them is motifscan (python based motif analysis toolkit), TFBSTools (R based motif abalysis toolkit), GimmeMotifs another python implementation etc.

All the best.

Regards,

Nitin N.

[John]

Hello, thank you for the reply. I do need to use R, and I also need to use PANDA (Passing Attributes between Networks for Data Assimilation). It doesn't look like the TFBSTools resource you provided is under PANDA (but please correct me if I'm wrong).