could not find function "gseGO" in ClusterProfiler
0
0
Entering edit mode
17 months ago
Nitin • 0

I am trying to run the code using the example data set,

gse <- gseGO(geneList=gene_list,
ont ="ALL",
keyType = "ENSEMBL",
nPerm = 10000,
minGSSize = 3,
maxGSSize = 800,
pvalueCutoff = 0.05,
verbose = TRUE,
OrgDb = org.Dm.eg.db,
pAdjustMethod = "none")

However I see the following error

Error in gseGO(geneList = gene_list, ont = "ALL", keyType = "ENSEMBL", :
could not find function "gseGO".
ClusterProfiler R gseGO • 939 views
ADD COMMENT
0
Entering edit mode

Did you import the package?

ADD REPLY

Login before adding your answer.

Traffic: 1613 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6