Entering edit mode
16 months ago
dzisis1986
▴
70
Hello I have .csv files for different samples with the following information
Locus Genotype QC Indicators
rs6690515 G,G
rs28635343 C,C
rs16824588 T,C
rs424079 A,A
and
Locus Allele_Name Typed_Allele? Reads
rs6690515 A No 0
rs6690515 G Yes 392
rs28635343 C Yes 4001
rs28635343 T No 0
rs16824588 C Yes 595
rs16824588 T Yes 486
rs424079 A Yes 1051
rs424079 C No 0
Is it possible to manipulate and change this information in order to create proper file format for Plink ? Can I create .ped or .map files from that ?