Seurat - LoadLoom Error: missing values are not allowed in subscripted assignments of data frames
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3.0 years ago
mbk0asis ▴ 700

Hi~

I'm trying to read a loom file into Seurat, but having an error.

Here's a code I used in the below.

> toti <- LoadLoom("directory/GSE145609_Pre_implantation_ESCs_embryo_data.loom")

Reading in /matrix
Storing /matrix as counts
Saving /matrix to assay 'RNA'
Error in `[<-.data.frame`(`*tmp*`, names.intersect, i[index], value = c(`0610005C13Rik` = 0L,  : 
  missing values are not allowed in subscripted assignments of data frames

I also tried Connect --> as.Seurat but still got the same error.

Can someone tell me what the problem is here?

Thank you!

loom Seurat • 1.0k views
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