Entering edit mode
3.0 years ago
mbk0asis
▴
700
Hi~
I'm trying to read a loom file into Seurat, but having an error.
Here's a code I used in the below.
> toti <- LoadLoom("directory/GSE145609_Pre_implantation_ESCs_embryo_data.loom")
Reading in /matrix
Storing /matrix as counts
Saving /matrix to assay 'RNA'
Error in `[<-.data.frame`(`*tmp*`, names.intersect, i[index], value = c(`0610005C13Rik` = 0L, :
missing values are not allowed in subscripted assignments of data frames
I also tried Connect --> as.Seurat
but still got the same error.
Can someone tell me what the problem is here?
Thank you!
I am also having this problem. Let me know if anyone has a solution.