Looking to expand annotation of kegg in data frame R
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16 months ago

I have a list of kegg orthologs with there annotations and I am looking to get the hierarchy of those, particularly the B, for my analysis.

A Metabolism
B   Carbohydrate Metabolism
C     00010 Glycolysis / Gluconeogenesis [PATH:ko00010]
D       K00844  HK; hexokinase [EC:2.7.1.1]
D       K12407  GCK; glucokinase [EC:2.7.1.2]
D       K00845  glk; glucokinase [EC:2.7.1.2]

What I have is a list of the following output: 00194 Photosynthesis proteins [BR:ko00194] and 00365 Furfural degradation [PATH:ko00365]

has anyone faced a similar situation?

kegg orthologs annotations R • 455 views
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