How to plot VDJ clonotyping data in UMAP of Seurat object using Immunarch

Question

[은서]

Hello, I'm new to Immunarch and I'm trying to plot VDJ information on a Seurat UMAP plot. However, I'm having trouble finding any tutorials or vignettes related to this topic, apart from those mentioning the select_clusters and select_barcodes functions. The plot above is an example from the Immcantation tutorial. Unfortunately, I can't use Immcantation due to difficulties with Docker.

[Ming Tommy Tang]

use https://www.bioconductor.org/packages/release/bioc/html/scRepertoire.html instead. you can combine the TCR/BCR information to the seurat object and then plot upon UMAP.