Where can I find the --chromosomes file for kallisto?

Question

[bioinfo]

Hello,

I am using the mouse index from https://github.com/pachterlab/kallisto-transcriptome-indices/releases to run kallisto. I would also like to run kallisto genomebam to get the bam files. The gtf file is included in the link where I got the index. However, i cannot figure out where to get the --chromosomes file. I know it is just recommended and not required but I would prefer to use it. Where can I find it though?

Thank you

Answer 1

[dsull]

https://hgdownload-test.gi.ucsc.edu/goldenPath/hg38/bigZips/

The chrom.sizes file

[GenoMax]

OP wanted mouse so: https://hgdownload-test.gi.ucsc.edu/goldenPath/mm10/bigZips/mm10.chrom.sizes

[bioinfo]

Thank you so much!