Entering edit mode
17 months ago
sidrah.maryam
▴
60
Hello everyone,
I am trying to reproduce this tutorial using the data I have.
However, when I am mapping the query to the reference,
query = mapQuery(query_exp, query_metadata, reference, do_normalize = TRUE, do_umap = TRUE)
I get an error saying
Normalizing Scaling and synchronizing query gene expression Found 1795 out of 2000 reference variable genes in query dataset
Error in scaleRowsWithStats_dgc(A@x, A@p, AHughie, mean_vec, sd_vec, ncol(A), : Not compatible with requested type: [type=NULL; target=double].
In addition: Warning message: Unknown or uninitialised column: stddev.
Can you please let me know the possible reason and the solution.