How to check the quality of fasta file

Question

[anasjamshed]

We use fastqc tool to check the quality of the data. But which tool we can use to check the quality of fasta file?

Answer 1

[GenoMax]

we can use to check the quality of fasta file?

Fasta data does not have any quality values/basecall confidence measure associated with it. So nothing to check.

[anasjamshed]

But then how we can check the fasta file?

[GenoMax]

Check for what? What is it that you want to do?

[anasjamshed]

I want to check it to remove the duplicates

[GenoMax]

Depending on what it is you are trying to remove duplicates from you can use CD-HIT (LINK) or even clumpify.sh will probably work.