Entering edit mode
16 months ago
Axzd
▴
80
Hello,
I wanted to expand the gVCF block of my vcf but I got this as a result
##bcftools_convertCommand=convert --gvcf2vcf -f Adineta_vaga.fsa; Date=Tue Aug 1 11:51:21 2023
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ancestor
Chrom_3 793 . G T 172.33 . AC=2;AF=1;AN=2;DP=10;ExcessHet=3.0103;FS=0;InbreedingCoeff=0.4054;MLEAC=3;MLEAF=0.5;MQ=25;QD=21.54;SOR=4.407 GT:AD:DP:GQ:PL 1/1:0,3:3:9:89,9,0
Chrom_3 1387 . A T 66.18 . AC=0;AF=1;AN=0;DP=2;ExcessHet=3.0103;FS=0;InbreedingCoeff=0.354;MLEAC=1;MLEAF=0.5;MQ=27;QD=33.09;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL:PS ./.:0,0:0:.:.:.:0,0,0:.
Chrom_3 1398 . C T 66.18 . AC=0;AF=1;AN=0;DP=3;ExcessHet=3.0103;FS=0;InbreedingCoeff=0.354;MLEAC=1;MLEAF=0.5;MQ=27;QD=33.09;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL:PS ./.:
That doesn't seem so expanded to me ^^' Any idea what might have gone wrong? The command I used is in the code above/
show us the gVCF