fasttree running problem
0
0
Entering edit mode
16 months ago
chopinone • 0

Why is it that when I use fasttree to compare sequences it always tells me that “Error reading header line”

C:\Users\wansh\downloads> .\fasttree -nt -gtr sequence(4).fasta>sequence4.tree
FastTree Version 2.1.11 No SSE3
Alignment: sequence
Nucleotide distances: Jukes-Cantor Joins: balanced Support: SH-like 1000
Search: Normal +NNI +SPR (2 rounds range 10) +ML-NNI opt-each=1
TopHits: 1.00*sqrtN close=default refresh=0.80
ML Model: Generalized Time-Reversible, CAT approximation with 20 rate categories
Error reading header line

I'm begging you to help me out.

fasttree • 1.1k views
ADD COMMENT
2
Entering edit mode

There are many extremely bright and knowledgeable people on this forum, but don't think any of them have psychic abilities. I think you will need to show the header first.

I don't think there is any need to beg for help. Given enough information, people will help if they can - that is what Biostars is about.

ADD REPLY
0
Entering edit mode

ok, thank you a lot

ADD REPLY
0
Entering edit mode

Error reading header line

did you check the header lines of your input(s),

also with those strange parenthesis ( sequence(4).fasta>sequence4.tree) , you should quote the filenames....

ADD REPLY
0
Entering edit mode

yes, i've checked it, but it is not work

ADD REPLY

Login before adding your answer.

Traffic: 2399 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6