Tool:pyGenomeViz - A genome visualization python package for comparative genomics
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16 months ago
moshi ▴ 150

pyGenomeViz is a genome visualization python package for comparative genomics implemented based on matplotlib. This package is developed for the purpose of easily and beautifully plotting genomic features and sequence similarity comparison links between multiple genomes. It supports genome visualization of Genbank/GFF format file and can be saved figure in various formats (JPG/PNG/SVG/PDF/HTML).

GitHub | Document


pyGenomeViz API and CLI enable users to plot the following figures.

pyGenomeViz_gallery.png
Fig.1 pyGenomeViz example plot gallery


pyGenomeViz GUI (Web Application) enables users to plot comparative genome figure from Genbank files interactively and easily as shown below.

pyGenomeViz_gui_demo.gif
Fig.2 pyGenomeViz GUI (Web Application) example (Demo Page)


pyGenomeViz provides a simple and easy-to-use HTML viewer as an output result as shown below.

pyGenomeViz_html_demo.gif
Fig.3 pyGenomeViz HTML viewer example (Demo Page)

genome comparative-genomics python microbial-genomics visualization • 1.2k views
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Very nice package! I am trying to build something similar for R: geneviewer

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