Principal component analysis (PCA) from Desmond output file

Question

[bhavya2269]

Hi All,

I have the output (-out.cms) file of the protein ligand simulation from Desmond. Now I want to perform principal component analysis (PCA) for the same. How to perform PCA on Desmond trajectory using prody? Can you please suggest any tools to perform PCA from Desmond output file?

Thank you