Converting a bam dataset to vcf

Question

[guntul]

I have a wgs dataset in a bam file. What is the best/possible ways of extracting a vcf file from it?

[4galaxy77]

Lots of questions about this already how to get to a VCF from bam files

Answer 1

[ATpoint]

The process is called variant calling and there is plenty of great resources, pipelines and tutorials out there if you google for it. Please invest that effort.