Is there a way to visualize RNA fold in R
0
0
Entering edit mode
15 months ago
Serij´s • 0

Hi,

I am currently using the LncFinder-package in R to predict the secondary structure of RNA. I generated multiple dot-bracket-notations and I was wondering if there is a way to visualize all the structures I am generating.

Methods in R is preferable. I also don't mean a circle-Plot. i know how to do that. I am looking for a way to plot the structure directly in R or by integrating a different plot-software with R (python is also OK). I want to automate the process of plotting my data (multiple dot-notation files), instead of using the RNAFold Web visualizer or VARNA/jalview and importing each file one by one.

fold secondary R structure RNA • 1.0k views
ADD COMMENT
0
Entering edit mode

RStudio is an interface, the language is called R. If you use R and python solutions are available then use reticulate to call python from inside R, that works very well actually.

ADD REPLY
0
Entering edit mode

Maybe it is worth taking a look at this one?

https://cran.r-project.org/web/packages/RRNA/RRNA.pdf

ADD REPLY

Login before adding your answer.

Traffic: 2241 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6