How to extract gene lists following DEG analysis?
0
0
Entering edit mode
14 months ago
hellokwmin • 0

Hello,

After gene read counts, I performed DEseq2 using R software. Then, I filtered my DEG file based on pvalue <0.01 & log2FC > |1|.

Then, I conducted functional annotation based on arabidopsis database. The result was as below: enter image description here

Actually, there are almost 30,000 gene annotated. my question is within annotated data, I would like to only extract "photosynthesis-related genes".

How could I achieve this mission?

Thank you.

extract gene lists • 485 views
ADD COMMENT
0
Entering edit mode

You need a definition of photosynthesis-related genes. A brief literature search shows that people have defined such sets in the past. Do you have something specific in mind?

ADD REPLY

Login before adding your answer.

Traffic: 1904 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6