Entering edit mode
14 months ago
langziv
▴
70
Hi.
How can one associate between the generic transcript names and the actual genes of the studied organism?
Here are the first few lines of the output file kallisto.gene.counts.matrix.Control_vs_Serum.edgeR.DE_results
(which I understood is the relevant one for differential expression analysis):
sampleA sampleB logFC logCPM PValue FDR
TRINITY_DN20_c32_g3 Control Serum 9.23276616667445 12.9356943987126 2.99593148556322e-21 1.20271669487936e-16
TRINITY_DN4_c16_g1 Control Serum 8.63278061282675 10.5525746902278 2.83205795956004e-18 5.68464833932689e-14
TRINITY_DN16_c15_g4 Control Serum 8.1299403156539 12.8442074535907 1.08780718396644e-17 1.32166860920557e-13
I looked at the other output files but didn't find a relevant information.
I got the organism's fasta file of annotated CDSs. Should I use it in blastn to annotate the differential expression results?