Visualization of multiple sequence alignment quality

Question

[dec986]

I have a multiple sequence alignment output, and I wish to visualize the quality of the output thus:

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-484#author-information

that paper doesn't appear to have a downloadable program, unfortunately. The author's email address doesn't work.

What program will produce visualizations of MSA quality like these?

[Pierre Lindenbaum]

https://uefconnect.uef.fi/en/person/virpi.ahola/

[GenoMax]

First part is a sequence logo. You can create them online here: https://weblogo.berkeley.edu/examples.html

[dec986]

thnx! the score plots are very important too, but unfortunately none of the popular alignment algorithms make this kind of information

[GenoMax]

Use plotcon from EMBOSS. command line reference: https://emboss.sourceforge.net/apps/cvs/emboss/apps/plotcon.html

Web interface for the tool: https://www.bioinformatics.nl/cgi-bin/emboss/plotcon