Entering edit mode
15 months ago
Elizabeth
▴
10
Hi! I am trying to use this code to access Microsatellita data:
query <- GDCquery(project = "TCGA-COAD",
data.category = "Other",
legacy = TRUE,
access = "open",
data.type = "Auxiliary test",
barcode = c("TCGA-AD-A5EJ","TCGA-DM-A0X9"))
from TCGAbiolinks help documents, but I have this error message: "Error in checkDataCategoriesInput(project, data.category, legacy) : Please set a valid data.category argument from the column data_category above. We could not validade the data.category for project TCGA-COAD"
What data.category should I use? (because data.category = "Other" doesn't exist)
Thanks!
Please check that
TCGAbiolinks
does not haveOther
in thedata.category
option. Please check the options available for this function simply running-And do not provide parameters blindly.