Automatic Cluster Annotation to the subsets of immune cells

Question

[synat.keam]

Dear Fellow,

I am wondering whether you all know any packages and reference annotation that can be used for automatic annotation down to the detailed subset of immune cells for single cell RNAseq. Have a good day!

Kind Regards,
synat

Answer 1

[bk11]

CellTypist is the best for this. Give it a try.

https://www.celltypist.org/tutorials

[Laker Chandler]

This is great. However, it is only for human cells? How about mice? Thanks,