Genewise output help

0

Entering edit mode

15 months ago

lorenzoedg • 0

Looking for some documentation or help reading the output file for genewise alignment of protein seq to DNA seq

Thank you!

genewise • 897 views

ADD COMMENT • link updated 15 months ago by Jean-Karim Heriche 27k • written 15 months ago by lorenzoedg • 0

1

Entering edit mode

If you are talking about Ewan Birney's programs from 20 years ago, it is very likely that they are not supported any more.

Pasting part of the output will make it more likely that someone will be able to offer advice.

ADD REPLY • link 15 months ago by Mensur Dlakic ★ 28k

1

Entering edit mode

There aren't many programs for protein to genome alignment. One is exonerate which is also ~20 years old. However, there's now Li Heng's miniprot.

ADD REPLY • link 15 months ago by Jean-Karim Heriche 27k

0

Entering edit mode

Yes Ewan Birney's program. I will update OG post. Are there any updated tools recommended for protein seq pairwise aligment to genomic DNA seq?

ADD REPLY • link 15 months ago by lorenzoedg • 0

Login before adding your answer.