chromosome location

Question

[Farzana]

I have some gene id, start position,end position and their chromosome number. How can I visualize this data by a colorful figure?

[biofalconch]

If your genome is already in the UCSC genome browser (https://genome.ucsc.edu/), you can visualise the gene structures there, export to a pdf file you can later edit using software like Illustrator/Inkscape. Otherwise, you can download your genome, your gene annotation in GTF format and use IGV to do the same thing in your computer :)

Answer 1

[Umer]

What you can do is use SnapGene

1. Download the genome (fasta file)
2. Load it into Snapgene
3. Find gene locations based on the information you already have (chr# : start_pos , end_pos)
4. Highlight it, Label it and then capture/export the image.

other option the i rember right now is TBtools Can be downloaded here