Entering edit mode
11 months ago
睿紘
•
0
Hi there,
I am using calcDivergenceFromAlign to calculate k-distance by calcDivergenceFromAlign.pl (script from repeatMasker). However, the result makes me confused.
For example, the smallest LINE/L2 Kimura% is 2.58,
" LINE/L2 rnd-6_family-29449 34415 34101 2.58 "
but the "Coverage for each repeat class and divergence (Kimura)" shows that LINE/L2 have both div 0 and 1.
My question is , is Kimura% not equal to the div catalog? I though that div 0 and 1 should be zero, and begin have value start from div 2.
Thank you for helping.
Best regard, Jui-Hung
For additional information,
"Coverage for each repeat class and divergence (Kimura)" is also the result from calcDivergenceFromAlign.pl